For informational purposes only. Information may not be complete or accurate. Always verify before use. For complex pool issues, consult a qualified pool professional. See our Terms of Service.

Can Pool Algae Be Brown? Types, ID & Treatment Guide

Algae Green Pool Medium 3-5 days 15 views

Is brown stuff in my pool actually algae or something else?

So I've been dealing with this brownish gunk floating around my pool and I'm honestly not sure what I'm looking at. I know green algae is the usual suspect, but this stuff is definitely more brown/yellowish. Is that even a thing with pool algae?

I'm trying to figure out if I need to shock it like regular algae or if there's some other treatment I should be doing. Don't want to waste a bunch of chemicals if I'm treating the wrong problem!

Dear Sarah L.,

Quick Answer

Yes, pool algae can be brown. This typically indicates mustard algae (yellow-brown) or dead/dying green algae that has turned brownish. Treatment requires proper identification and targeted chlorine shock treatment.

Tools & Supplies Needed

pool test kit liquid chlorine pool brush muriatic acid measuring containers

Find on Amazon: Taylor K-2006C Pool Test Kit , Liquid Chlorine Pool Shock , Pool Algae Brush

Quick Answer

Yes, pool algae can absolutely be brown. Brown coloration in pool water typically indicates either mustard algae (which appears yellow-brown), dead or dying green algae that has oxidized to a brownish color, or in rare cases, true brown algae. The brown appearance often confuses pool owners who expect algae to always be green, but proper identification and treatment will restore your pool to crystal clear condition.

Types of Brown Algae in Pools

Mustard Algae (Yellow-Brown Algae)

The most common cause of brown algae appearance is actually mustard algae, scientifically known as yellow algae. This stubborn organism appears yellow-brown to brownish-green and typically clings to pool walls, steps, and shaded areas. Mustard algae is chlorine-resistant and often mistaken for dirt or sand because it brushes off easily but returns quickly.

Mustard algae thrives in pools with inadequate chlorine levels relative to stabilizer (CYA) levels. It's particularly common in warmer climates and can survive in properly chlorinated water if the free chlorine to CYA ratio isn't maintained correctly.

Dead Green Algae

Green algae that has been shocked with chlorine often turns brown or grayish-brown as it dies and oxidizes. This is actually a good sign that your shock treatment is working, but the dead algae needs to be filtered out completely to prevent it from becoming food for new algae growth.

True Brown Algae

True brown algae is relatively rare in swimming pools but can occur, particularly in pools with high organic content or those that have been neglected for extended periods. This type appears as a brownish film or coating and is often accompanied by other contaminants.

Proper Identification Methods

Visual Inspection

Examine the algae's behavior and appearance closely. Mustard algae typically appears in patches on pool surfaces, especially in areas with less circulation. It brushes off easily with a pool brush but returns within 12-24 hours. True brown algae tends to form more of a coating or film.

Brush Test

Use a pool brush to disturb the brown material. If it creates a cloud that settles back down, you're likely dealing with mustard algae. If it comes off in sheets or films, it might be true brown algae or biofilm.

Water Testing

Test your water chemistry immediately using a quality test kit like the Taylor K-2006C. Focus on free chlorine (FC), combined chlorine (CC), pH, total alkalinity (TA), and cyanuric acid (CYA) levels. Brown algae problems often correlate with improper FC/CYA ratios.

Treatment Protocol for Brown Algae

Step 1: Water Chemistry Assessment

Before adding any chemicals, get accurate readings of all chemical levels. For mustard algae treatment, you'll need to follow a modified SLAM (Shock Level And Maintain) process that's more aggressive than standard green algae treatment.

Step 2: Brush Thoroughly

Brush all pool surfaces vigorously, paying special attention to areas where brown algae is visible. This step is crucial because mustard algae clings tightly to surfaces and must be disturbed to expose it to sanitizer.

Step 3: Shock Treatment

For mustard algae, raise free chlorine to shock level based on your CYA reading, then add an additional 10 ppm. If your CYA is 50 ppm, normal shock level would be 20 ppm FC, but for mustard algae, target 30 ppm FC. Use liquid chlorine (sodium hypochlorite) rather than calcium hypochlorite to avoid raising calcium hardness.

Dosing calculation: Each gallon of 12.5% liquid chlorine raises FC by approximately 13 ppm in 10,000 gallons of water. Adjust accordingly for your pool size.

Step 4: Maintain Shock Level

Unlike green algae treatment, mustard algae requires maintaining shock level for 24-48 hours minimum. Test FC every 8 hours and add more liquid chlorine to maintain your target level. The algae must be completely eliminated before reducing chlorine levels.

Step 5: pH Management

Liquid chlorine will raise pH, so monitor and adjust using muriatic acid to keep pH between 7.4-7.6. High pH reduces chlorine effectiveness, making algae harder to kill.

Filtration and Cleaning

Continuous Filtration

Run your pool pump and filter 24/7 during treatment. Mustard algae and dead brown algae particles must be filtered out completely. Backwash or clean your filter when pressure rises 8-10 psi above starting pressure.

Equipment Sanitization

Mustard algae can survive on pool equipment and toys. Soak all pool accessories, including brushes, vacuum heads, and toys, in a solution of 10% liquid chlorine for several hours or overnight.

Filter Deep Clean

For persistent mustard algae, consider using a filter cleaner like Natural Chemistry Filter Perfect or soaking filter elements in a mild muriatic acid solution (1 part acid to 20 parts water) to remove algae residue.

Prevention Strategies

Maintain Proper FC/CYA Ratio

The key to preventing brown algae is maintaining adequate free chlorine relative to your stabilizer level. Use the FC/CYA chart: for 50 ppm CYA, maintain minimum 4 ppm FC daily, with 6 ppm preferred for mustard algae prevention.

Regular Brushing Schedule

Brush your pool weekly, focusing on areas with poor circulation. This prevents algae from establishing colonies on surfaces.

Shock Weekly

In areas prone to mustard algae, shock weekly to break chloramines and eliminate developing algae colonies before they become visible.

When to Call a Professional

If brown algae persists after 72 hours of proper SLAM treatment, or if you're uncomfortable handling large quantities of liquid chlorine, contact a certified pool professional. Some cases may require specialized algaecides or equipment cleaning that's best handled professionally.

Remember, successful brown algae treatment requires patience and consistent chemical maintenance. The key is identifying the specific type of algae and following through with complete treatment rather than taking shortcuts that allow the problem to return.

Was this guide helpful?

Need More Help?

Try our free pool calculators and tools to help diagnose and fix your pool problems.

Browse Pool Tools

SLAM calculator, pH calculator, salt dosing & more

Tags: #brown algae #mustard algae #yellow algae #algae identification #pool shock treatment
For informational purposes only. Information may not be complete or accurate. Always verify before use. For complex pool issues, consult a qualified pool professional. See our Terms of Service.